Computational Biology

Carl Bergstrom in Wired on why it is hard to predict where Covid-19 is headed

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Value of models for membrane budding

Submitted by Matthew-Akamatsu on Wed, Oct 6, 2021

Lee CT, Akamatsu M, Rangamani P.  2021.  Value of models for membrane budding. Current Opinion in Cell Biology. 71:38–45.

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Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis

Submitted by Matthew-Akamatsu on Wed, Oct 6, 2021

Akamatsu M, Vasan R, Serwas D, Ferrin MA, Rangamani P, Drubin DG.  2020.  Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis. eLife. 9

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A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction

Submitted by Matthew-Akamatsu on Wed, Oct 6, 2021

Vasan R, Rudraraju S, Akamatsu M, Garikipati K, Rangamani P.  2020.  A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction. Soft matter. 16:784–797.

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Intracellular Membrane Trafficking: Modeling Local Movements in Cells

Submitted by Matthew-Akamatsu on Wed, Oct 6, 2021

Vasan R, Akamatsu M, Schöneberg J, Rangamani P.  2018.  Intracellular Membrane Trafficking: Modeling Local Movements in Cells. Cell Movement. 1788:259–301.

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Cytokinetic nodes in fission yeast arise from two distinct types of nodes that merge during interphase

Submitted by Matthew-Akamatsu on Wed, Oct 6, 2021

Akamatsu M, Berro J, Pu K-M, Tebbs IR, Pollard TD.  2014.  Cytokinetic nodes in fission yeast arise from two distinct types of nodes that merge during interphase. The Journal of cell biology. 204:977–988.

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Carl Bergstrom in The New Republic on future of COVID-19 pandemic

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Publication bias and the canonization of false facts

Submitted by Carl-Bergstrom on Sat, Aug 7, 2021

Nissen SBoye, Magidson T, Gross K, Bergstrom CT.  2016.  Publication bias and the canonization of false facts. Elife. 5:e21451.

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Systems and methods for data analysis

Submitted by Carl-Bergstrom on Sat, Aug 7, 2021

Bergstrom C, Rosvall M, Vilhena D, West JD, Torrance A.  2017.  Systems and methods for data analysis.

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Science of science

Submitted by Carl-Bergstrom on Sat, Aug 7, 2021

Fortunato S, Bergstrom CT, Börner K, Evans JA, Helbing D, Milojević S, Petersen AM, Radicchi F, Sinatra R, Uzzi B et al..  2018.  Science of science. Science. 359

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