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Genetics and Genomics

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles

Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, Chertkov O, Monnat RJ, Cattolico R.  2014.  The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. BMC Genomics. 15(1):604.

Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae)

Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, Patterson J, Monnat RJ, Barlow SB, Starkenburg SR et al..  2015.  Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae). PLOS Genetics. 11(9):e1005469.

Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae)

Grummer JA, Bryson RW, Reeder TW.  2014.  Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae). Systematic biology. 63:119–133.

Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing

Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW.  2015.  Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing. Genome biology and evolution. 7:706–719.

Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands

Grummer JA, Calderón-Espinosa ML, de Oca ANieto-Mont, Smith EN, de la Cruz FRMéndez-, Leaché AD.  2015.  Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands. Molecular ecology. 24:1523–1542.

Bayesian inference of species diffusion in the West African Agama agama species group (Reptilia, Agamidae)

Leaché AD, Grummer JA, Miller M, Krishnan S, Fujita MK, Böhme W, Schmitz A, Lebreton M, Ineich I, Chirio L et al..  2016.  Bayesian inference of species diffusion in the West African Agama agama species group (Reptilia, Agamidae). Systematics and Biodiversity. :1–12.

Partial redundancy and functional specialization of E-class SEPALLATA genes in an early-diverging eudicot

Soza VL, Snelson CD, Hazelton KDHewett, Di Stilio VS.  2016.  Partial redundancy and functional specialization of E-class SEPALLATA genes in an early-diverging eudicot. Developmental Biology. 419(1):143-155.

Timing of antimicrobial use influences the evolution of antimicrobial resistance during disease epidemics

Tanaka M.M, Althouse B.M, Bergstrom C.T.  2014.  Timing of antimicrobial use influences the evolution of antimicrobial resistance during disease epidemics. Evolution, Medicine, and Public Health. 2014(1):150-161.

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