Genetics and Genomics

Jared Grummer investigates impact of dams on coastal tailed frogs

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Santana Lab on Coevolution of Peppers and Bats

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The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles

Submitted by Chloe-Deodato on Wed, Dec 21, 2016

Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, Chertkov O, Monnat RJ, Cattolico R.  2014.  The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. BMC Genomics. 15(1):604.

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Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae)

Submitted by Chloe-Deodato on Wed, Dec 21, 2016

Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, Patterson J, Monnat RJ, Barlow SB, Starkenburg SR et al..  2015.  Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae). PLOS Genetics. 11(9):e1005469.

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Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae)

Submitted by Jared-Grummer on Tue, Dec 20, 2016

Grummer JA, Bryson RW, Reeder TW.  2014.  Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae). Systematic biology. 63:119–133.

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Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing

Submitted by Jared-Grummer on Tue, Dec 20, 2016

Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW.  2015.  Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing. Genome biology and evolution. 7:706–719.

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Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands

Submitted by Jared-Grummer on Tue, Dec 20, 2016

Grummer JA, Calderón-Espinosa ML, de Oca ANieto-Mont, Smith EN, de la Cruz FRMéndez-, Leaché AD.  2015.  Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands. Molecular ecology. 24:1523–1542.

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Bayesian inference of species diffusion in the West African Agama agama species group (Reptilia, Agamidae)

Submitted by Jared-Grummer on Tue, Dec 20, 2016

Leaché AD, Grummer JA, Miller M, Krishnan S, Fujita MK, Böhme W, Schmitz A, Lebreton M, Ineich I, Chirio L et al..  2016.  Bayesian inference of species diffusion in the West African Agama agama species group (Reptilia, Agamidae). Systematics and Biodiversity. :1–12.

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Survey for Batrachochytrium dendrobatidis in North Cascades National Park, Washington, USA

Submitted by Jared-Grummer on Tue, Dec 20, 2016

Grummer JA, Leaché AD.  2016.  Survey for Batrachochytrium dendrobatidis in North Cascades National Park, Washington, USA. Herpetological Review. 47(3)

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Partial redundancy and functional specialization of E-class SEPALLATA genes in an early-diverging eudicot

Submitted by Valerie-Soza on Thu, Dec 15, 2016

Soza VL, Snelson CD, Hazelton KDHewett, Di Stilio VS.  2016.  Partial redundancy and functional specialization of E-class SEPALLATA genes in an early-diverging eudicot. Developmental Biology. 419(1):143-155.

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