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2008
Amemiya CT, Prohaska SJ, Hill-Force A, Cook A, Wasserscheid J, Ferrier DE, Pascual-Anaya J, Garcia-Fernandez J, Dewar K, Stadler PF.  2008.  The amphioxus Hox cluster: characterization, comparative genomics, and evolution. J Exp Zool B Mol Dev Evol. 310(5):465-477.
2007
Amemiya CT, Saha NR, Zapata A.  2007.  Evolution and development of immunological structures in the lamprey. Curr Opin Immunol. 19(5):535-541.
2004
Noonan JP, Grimwood J, Danke J, Schmutz J, Dickson M, Amemiya CT, Myers RM.  2004.  Coelacanth genome sequence reveals the evolutionary history of vertebrate genes. Genome Res. 14(12):2397-2405.